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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
59
DNA binding
9
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
narrow histone mark
Date released
27
December, 2018
17
January, 2019
15
November, 2018
8
January, 2021
1
January, 2018
Available data
59
bam
59
fastq
54
bigWig
53
bed narrowPeak
53
bigBed narrowPeak
Organism
68
Homo sapiens
Biosample type
60
cell line
8
primary cell
Organ
518
liver
391
pancreas
274
epithelium
212
kidney
187
heart
170
connective tissue
145
brain
143
vasculature
138
blood vessel
100
limb
97
bone element
78
adipose tissue
77
artery
74
musculature of body
68
blood
68
bodily fluid
39
eye
30
nerve
23
spleen
18
ureter
16
vein
15
embryo
12
skeleton
11
lung
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
60
AMP
8
T1D
Genome assembly (visualization)
54
hg19
53
GRCh38
Lab
60
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
target.investigated_as!
narrow histone mark
lab.title!
Bing Ren, UCSD
assay_slims!
Transcription
BIOSAMPLE
ASSAY
68 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
59
1
primary cell
peripheral blood mononuclear cell
8
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