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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
16
ChIP-seq
Assay category
195
DNA accessibility
16
DNA binding
Target of assay
28
histone
28
histone modification
16
broad histone mark
narrow histone mark
Date released
187
June, 2019
12
August, 2017
9
October, 2019
2
November, 2017
1
November, 2020
Available data
2987
bam
2717
bigWig
1590
tsv
1376
bed narrowPeak
fastq
893
bigBed narrowPeak
293
bed broadPeak
271
bigBed broadPeak
260
bed bed3+
224
tagAlign
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
21
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
Organism
211
Homo sapiens
Biosample type
181
tissue
29
primary cell
1
cell line
Organ
78
kidney
41
musculature of body
36
limb
32
brain
30
heart
18
epithelium
18
ureter
13
vasculature
11
blood vessel
9
pancreas
7
connective tissue
4
artery
4
eye
4
vein
2
liver
2
nerve
1
adipose tissue
Project
211
AMP
Genome assembly (visualization)
197
GRCh38
188
hg19
Lab
211
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
target.investigated_as!
narrow histone mark
lab.title!
Bing Ren, UCSD
files.file_type!
fastq
BIOSAMPLE
ASSAY
211 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 40 more…
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
+ See 17 more…
cell line
Panc1
1
See all biosamples
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