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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
37
DNase-seq
12
total RNA-seq
9
ATAC-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
72
DNA binding
47
DNA accessibility
15
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
76
histone
76
histone modification
50
broad histone mark
narrow histone mark
22
control
Date released
56
October, 2019
39
June, 2019
19
August, 2017
10
July, 2019
6
February, 2021
5
March, 2020
5
May, 2019
4
February, 2020
2
May, 2022
1
January, 2018
Available data
113
bam
97
bigWig
91
bed narrowPeak
75
bigBed narrowPeak
45
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tsv
10
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
147
Homo sapiens
Biosample type
137
tissue
10
primary cell
Organ
869
pancreas
702
liver
651
connective tissue
479
adipose tissue
475
epithelium
353
heart
337
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
147
AMP
Genome assembly (visualization)
108
hg19
94
GRCh38
Lab
147
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
target.investigated_as!
narrow histone mark
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
147 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
27
2
5
1
skeletal muscle tissue
15
1
1
4
1
1
1
tibial artery
19
2
1
1
muscle of leg
5
13
1
muscle of arm
17
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primary cell
skeletal muscle satellite cell
5
1
1
skeletal muscle cell
1
1
1
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