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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
32
ChIP-seq
25
total RNA-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
123
Transcription
32
DNA binding
12
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
715
February, 2021
368
November, 2017
335
May, 2021
323
August, 2017
314
May, 2020
207
June, 2019
205
February, 2023
200
May, 2022
180
August, 2021
173
October, 2019
168
July, 2018
108
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
123
tsv
40
bam
36
bigWig
31
bed narrowPeak
15
tagAlign
3
bed bed3+
2
bedpe bed3+
1
hic
1
vcf
Organism
179
Homo sapiens
Biosample type
101
tissue
42
cell line
35
in vitro differentiated cells
2
primary cell
Organ
92
heart
31
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
4
epithelium
4
pancreas
2
artery
2
kidney
1
adipose tissue
Project
180
AMP
Genome assembly (visualization)
48
hg19
32
GRCh38
Lab
142
AMP-T2D consortium
Katalin Susztak, Upenn
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
target.investigated_as!
narrow histone mark
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
180 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
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cell line
HepG2
16
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
14
7
10
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
2
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