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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
89
total RNA-seq
5
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
99
DNA binding
89
Transcription
7
DNA accessibility
2
DNA methylation
Target of assay
103
histone modification
102
histone
narrow histone mark
49
broad histone mark
46
transcription factor
7
RNA binding protein
3
chromatin remodeller
2
control
Date released
568
February, 2021
252
November, 2017
234
May, 2021
199
June, 2019
197
August, 2017
188
May, 2020
164
July, 2018
96
August, 2021
88
October, 2019
79
July, 2019
79
November, 2018
63
May, 2019
62
December, 2017
57
September, 2018
53
November, 2019
49
April, 2018
42
April, 2019
36
October, 2018
35
February, 2023
30
December, 2018
25
May, 2024
23
February, 2018
23
January, 2019
13
March, 2020
13
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
197
bam
197
fastq
195
bigWig
89
tsv
76
bed narrowPeak
27
bed bed3+
26
bigBed narrowPeak
12
bed broadPeak
10
tagAlign
8
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
193
Homo sapiens
Biosample type
140
tissue
37
in vitro differentiated cells
20
primary cell
Organ
124
pancreas
52
connective tissue
15
adipose tissue
14
liver
9
epithelium
Project
197
AMP
Genome assembly (visualization)
216
hg19
197
GRCh38
Lab
197
AMP-T2D consortium
Audit category:
28
missing controlled_by
Audit category:
9
inconsistent control read length
2
inconsistent assembly
target.investigated_as!
narrow histone mark
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
197 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
tissue
islet of Langerhans
13
89
1
liver
13
white adipose tissue
12
pancreas
8
adipose tissue
2
+ See 2 more…
in vitro differentiated cells
adipocyte
36
1
primary cell
skeletal muscle myoblast
7
pancreatic alpha cell
3
1
pancreatic beta cell
3
1
pancreatic endocrine cell
4
pancreatic acinar cell
1
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