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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
156
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
156
DNA binding
11
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
92
histone
92
histone modification
69
transcription factor
58
broad histone mark
narrow histone mark
29
control
26
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
368
November, 2017
335
May, 2021
323
August, 2017
314
May, 2020
308
August, 2021
207
June, 2019
205
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
108
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
6
November, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
173
bam
143
bigWig
136
bed narrowPeak
136
bigBed narrowPeak
88
fastq
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
175
Homo sapiens
Biosample type
109
tissue
61
cell line
5
primary cell
Organ
53
liver
36
blood vessel
36
vasculature
20
brain
15
blood
15
bodily fluid
15
heart
9
pancreas
9
spleen
5
limb
5
musculature of body
4
epithelium
4
kidney
3
artery
1
adipose tissue
1
connective tissue
Project
175
AMP
Genome assembly (visualization)
142
GRCh38
134
hg19
Lab
175
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
narrow histone mark
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
175 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
snATAC-seq
tissue
ascending aorta
12
thoracic aorta
12
germinal matrix
10
temporal lobe
10
aorta
9
+ See 13 more…
cell line
HepG2
45
1
GM12878
15
primary cell
kidney epithelial cell
4
pancreatic cell
1
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