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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
465
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
80
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
narrow histone mark
2
other context
2
other post-translational modification
Date released
308
November, 2017
60
November, 2018
27
December, 2018
20
October, 2019
17
January, 2019
16
August, 2021
9
November, 2019
8
February, 2021
Available data
448
bam
412
fastq
392
bigWig
374
bed narrowPeak
343
bigBed narrowPeak
52
bed broadPeak
52
bigBed broadPeak
15
tagAlign
3
tar
Organism
465
Homo sapiens
Biosample type
583
tissue
465
cell line
164
primary cell
143
in vitro differentiated cells
2
stem cell
Organ
369
liver
59
blood
59
bodily fluid
19
pancreas
10
kidney
9
epithelium
6
artery
6
blood vessel
6
heart
6
vasculature
Project
465
AMP
Genome assembly (visualization)
388
hg19
330
GRCh38
Lab
449
AMP-T2D consortium
16
Bing Ren, UCSD
Audit category:
19
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
narrow histone mark
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
465 results
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ChIP-seq
cell line
HepG2
369
GM12878
59
Panc1
10
EndoC_BH1
9
smooth muscle cell of the coronary artery
6
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