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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
ChIP-seq
Assay category
436
Transcription
288
DNA accessibility
164
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
69
May, 2021
31
August, 2017
20
June, 2019
17
September, 2018
15
October, 2019
6
November, 2017
4
May, 2019
2
August, 2021
Available data
139
bam
135
bigWig
122
bed narrowPeak
54
fastq
53
tagAlign
31
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
1
bed bed3+
Organism
164
Homo sapiens
Biosample type
576
tissue
438
cell line
164
primary cell
143
in vitro differentiated cells
2
stem cell
Organ
57
epithelium
39
pancreas
15
vasculature
13
blood vessel
11
vein
10
kidney
8
connective tissue
6
brain
6
musculature of body
3
heart
2
eye
2
liver
Project
120
AMP
44
T1D
Genome assembly (visualization)
135
hg19
105
GRCh38
Lab
97
AMP-T2D consortium
67
Kyle Gaulton, UCSD
Audit category:
16
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
target.investigated_as!
narrow histone mark
month_released!
December, 2018
BIOSAMPLE
ASSAY
164 results
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ChIP-seq
primary cell
monocyte
44
CD8-positive, alpha-beta T cell
23
endothelial cell of umbilical vein
11
pancreatic endocrine cell
11
pancreatic alpha cell
9
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