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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
395
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
MeRIP-seq
Assay category
1227
Transcription
470
DNA accessibility
395
DNA binding
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
narrow histone mark
303
broad histone mark
control
91
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
205
August, 2017
163
June, 2019
143
May, 2020
120
July, 2018
95
February, 2023
86
October, 2019
77
July, 2019
66
May, 2022
60
May, 2019
47
September, 2023
43
April, 2019
42
November, 2017
40
May, 2021
40
November, 2019
38
March, 2020
34
December, 2017
34
October, 2018
25
February, 2020
25
May, 2024
23
November, 2018
19
April, 2020
18
October, 2017
15
May, 2023
8
January, 2021
6
April, 2018
5
March, 2019
4
January, 2019
December, 2018
3
December, 2019
2
January, 2018
2
November, 2020
1
August, 2022
Available data
1501
bigWig
1494
bam
1076
tsv
715
bed narrowPeak
450
bigBed narrowPeak
279
fastq
198
bed broadPeak
196
bed bed3+
176
bigBed broadPeak
157
txt
76
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2257
Homo sapiens
Biosample type
2263
tissue
938
primary cell
532
cell line
302
in vitro differentiated cells
8
stem cell
Organ
510
connective tissue
452
adipose tissue
444
pancreas
283
kidney
271
liver
259
heart
158
bone element
126
brain
99
blood vessel
99
vasculature
90
limb
69
musculature of body
60
artery
54
eye
24
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
12
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2168
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1602
GRCh38
1510
hg19
Lab
1928
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
narrow histone mark
control
month_released!
December, 2018
BIOSAMPLE
ASSAY
2263 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
snDrop-seq
MeRIP-seq
tissue
islet of Langerhans
292
21
68
6
1
7
4
3
1
1
2
adipose tissue
382
3
3
1
liver
167
60
20
1
2
3
1
1
1
1
kidney
49
11
75
64
13
6
1
1
1
bone element
84
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