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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
101
DNA binding
37
DNA accessibility
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
60
November, 2017
30
June, 2019
18
July, 2019
18
May, 2019
14
October, 2017
February, 2020
12
October, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
138
bam
116
bigWig
97
bed narrowPeak
94
bigBed narrowPeak
64
tagAlign
39
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
17
fastq
14
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
157
Homo sapiens
Biosample type
139
tissue
18
primary cell
Organ
872
pancreas
730
liver
649
connective tissue
477
adipose tissue
475
epithelium
339
kidney
325
heart
207
vasculature
202
blood vessel
159
bone element
157
brain
133
artery
104
limb
81
musculature of body
68
blood
68
bodily fluid
57
eye
34
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
157
AMP
Genome assembly (visualization)
110
GRCh38
72
hg19
Lab
157
AMP-T2D consortium
Audit category:
3
missing controlled_by
target.investigated_as!
narrow histone mark
month_released!
February, 2020
BIOSAMPLE
ASSAY
157 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
16
14
1
1
1
layer of hippocampus
15
temporal lobe
10
1
1
caudate nucleus
10
1
substantia nigra
10
+ See 24 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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