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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
5
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
37
DNA accessibility
31
DNA binding
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
histone modification
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
July, 2019
18
November, 2017
February, 2020
9
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
77
bam
56
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
19
tagAlign
14
tsv
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
87
Homo sapiens
Biosample type
69
tissue
18
primary cell
Organ
794
pancreas
687
liver
604
connective tissue
457
adipose tissue
431
epithelium
324
kidney
293
heart
162
vasculature
159
bone element
157
blood vessel
119
artery
87
brain
70
limb
68
blood
68
bodily fluid
61
musculature of body
57
eye
25
embryo
20
lung
19
spleen
18
nerve
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
87
AMP
Genome assembly (visualization)
49
GRCh38
47
hg19
Lab
87
AMP-T2D consortium
target.investigated_as!
narrow histone mark
histone modification
month_released!
February, 2020
BIOSAMPLE
ASSAY
87 results
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DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
3
1
1
1
cerebellum (Hemisphere)
1
2
1
1
frontal cortex
2
1
1
1
temporal lobe
2
1
1
caudate nucleus
1
2
+ See 24 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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