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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
26
ChIP-seq
4
RRBS
4
total RNA-seq
2
Hi-C
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
26
DNA binding
5
Transcription
4
DNA methylation
2
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
narrow histone mark
6
control
Date released
39
June, 2019
19
August, 2017
July, 2019
5
March, 2020
5
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
52
bigWig
49
bed narrowPeak
46
bam
41
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
10
tagAlign
5
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
73
Homo sapiens
Biosample type
66
tissue
7
primary cell
Organ
867
pancreas
721
liver
633
connective tissue
467
adipose tissue
462
epithelium
328
kidney
303
heart
198
vasculature
194
blood vessel
159
bone element
151
brain
132
artery
102
limb
73
musculature of body
68
blood
68
bodily fluid
57
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
73
AMP
Genome assembly (visualization)
57
hg19
43
GRCh38
Lab
73
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
target.investigated_as!
narrow histone mark
month_released!
July, 2019
BIOSAMPLE
ASSAY
73 results
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DNase-seq
ChIP-seq
RRBS
total RNA-seq
Hi-C
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
15
4
1
1
1
muscle of leg
13
5
muscle of arm
17
psoas muscle
2
2
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
5
skeletal muscle cell
1
1
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