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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
32
ChIP-seq
6
snATAC-seq
4
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
82
DNA accessibility
32
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
587
February, 2021
368
November, 2017
323
August, 2017
306
May, 2020
305
August, 2021
246
May, 2021
200
May, 2022
194
February, 2023
189
June, 2019
162
July, 2018
152
October, 2019
106
July, 2019
88
November, 2018
84
May, 2019
76
December, 2017
October, 2018
59
September, 2020
58
September, 2018
57
April, 2019
49
April, 2018
47
September, 2023
45
March, 2020
39
November, 2019
35
December, 2018
31
February, 2018
27
January, 2019
24
February, 2020
21
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
123
tsv
95
bed narrowPeak
64
xls
57
txt
40
bam
36
bigWig
15
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
304
Homo sapiens
Biosample type
229
tissue
39
cell line
35
in vitro differentiated cells
2
primary cell
Organ
130
kidney
92
heart
31
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
2
artery
2
epithelium
2
pancreas
1
adipose tissue
Project
305
AMP
Genome assembly (visualization)
96
GRCh38
49
hg19
Lab
140
AMP-T2D consortium
128
Katalin Susztak, Upenn
33
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
target.investigated_as!
narrow histone mark
month_released!
October, 2018
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
305 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
16
2
1
1
H1-hESC
8
HEK293T
2
in vitro differentiated cells
neural progenitor cell
10
7
14
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
2
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