Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
448
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
448
DNA binding
104
Transcription
12
DNA accessibility
1
DNA methylation
Target of assay
349
transcription factor
89
recombinant protein
76
control
64
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
broad histone mark
narrow histone mark
2
other context
2
other post-translational modification
Date released
307
November, 2017
95
February, 2021
61
November, 2018
27
December, 2018
26
October, 2019
22
January, 2019
11
November, 2019
8
August, 2021
4
March, 2020
4
May, 2021
Available data
565
bam
503
bigWig
419
fastq
386
bed narrowPeak
345
bigBed narrowPeak
119
tsv
53
bed broadPeak
53
bigBed broadPeak
15
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
565
Homo sapiens
Biosample type
1601
tissue
565
cell line
504
primary cell
250
in vitro differentiated cells
2
stem cell
Organ
359
liver
66
artery
66
blood vessel
66
heart
66
vasculature
59
blood
59
bodily fluid
54
pancreas
45
epithelium
15
kidney
8
embryo
Project
563
AMP
2
T1D
Genome assembly (visualization)
492
hg19
447
GRCh38
Lab
565
AMP-T2D consortium
Audit category:
56
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
narrow histone mark
month_released!
October, 2018
BIOSAMPLE
ASSAY
565 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
352
5
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
59
EndoC_BH1
9
33
1
Panc1
10
1
+ See 7 more…
See all biosamples
Download