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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
609
ChIP-seq
208
DNase-seq
25
ATAC-seq
5
FAIRE-seq
Assay category
609
DNA binding
238
DNA accessibility
Target of assay
388
transcription factor
349
histone
349
histone modification
216
broad histone mark
narrow histone mark
81
recombinant protein
80
RNA binding protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
284
November, 2017
199
June, 2019
73
November, 2018
63
May, 2019
48
October, 2019
42
April, 2019
34
December, 2017
October, 2018
30
December, 2018
29
August, 2017
18
January, 2019
14
September, 2018
5
October, 2017
5
September, 2017
2
July, 2019
1
November, 2020
Available data
2672
bam
2449
bigWig
1467
tsv
1237
bed narrowPeak
1085
fastq
847
bigBed narrowPeak
292
bed broadPeak
270
bigBed broadPeak
239
bed bed3+
196
tagAlign
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
vcf
Organism
843
Homo sapiens
Biosample type
419
tissue
345
cell line
83
primary cell
in vitro differentiated cells
Organ
335
liver
94
brain
94
kidney
72
heart
70
limb
58
vasculature
55
blood vessel
53
blood
53
bodily fluid
52
epithelium
43
pancreas
41
musculature of body
19
artery
18
nerve
18
ureter
15
connective tissue
11
spleen
8
vein
5
eye
4
adipose tissue
Project
847
AMP
Genome assembly (visualization)
806
GRCh38
784
hg19
Lab
847
AMP-T2D consortium
Audit category:
28
inconsistent control
15
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
23
inconsistent control read length
8
inconsistent control run_type
2
inconsistent assembly
target.investigated_as!
narrow histone mark
month_released!
October, 2018
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
847 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
37
2
kidney
10
13
1
heart
5
18
heart left ventricle
20
3
brain
5
14
+ See 52 more…
cell line
HepG2
287
GM12878
53
Panc1
3
1
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
8
2
endothelial cell of umbilical vein
5
2
1
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
+ See 24 more…
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