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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
38
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
DNase-seq
1
RNA microarray
Assay category
401
Transcription
38
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
20
broad histone mark
narrow histone mark
12
transcription factor
6
control
Date released
386
February, 2021
45
August, 2017
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
417
bam
417
bigWig
401
tsv
19
fastq
5
bed bed3+
5
bed narrowPeak
5
tagAlign
3
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
454
Homo sapiens
Biosample type
452
tissue
2
primary cell
1
in vitro differentiated cells
Organ
824
pancreas
678
liver
627
connective tissue
473
epithelium
455
adipose tissue
339
kidney
328
heart
210
vasculature
205
blood vessel
167
brain
159
bone element
135
artery
107
limb
83
musculature of body
58
eye
53
blood
53
bodily fluid
35
nerve
29
embryo
20
lung
18
ureter
16
skeleton
16
vein
14
spleen
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
455
AMP
Genome assembly (visualization)
418
hg19
417
GRCh38
Lab
455
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
narrow histone mark
month_released!
October, 2018
November, 2018
BIOSAMPLE
ASSAY
455 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
DNase-seq
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous abdominal adipose tissue
25
3
white adipose tissue
12
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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