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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1363
total RNA-seq
1113
ChIP-seq
471
ATAC-seq
367
single cell RNA-seq
201
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
48
pCHi-C
27
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
201
DNA accessibility
Date released
187
June, 2019
October, 2019
9
November, 2018
4
August, 2017
1
November, 2020
Available data
200
bam
200
bed narrowPeak
200
bigBed narrowPeak
200
bigWig
198
bed broadPeak
198
bigBed broadPeak
197
bed bed3+
11
fastq
Organism
201
Homo sapiens
Biosample type
174
tissue
27
primary cell
in vitro differentiated cells
Organ
78
kidney
33
musculature of body
32
brain
32
limb
30
heart
18
ureter
14
epithelium
8
connective tissue
7
pancreas
7
vasculature
6
liver
5
blood vessel
4
eye
2
adipose tissue
2
artery
1
spleen
Project
201
AMP
Genome assembly (visualization)
198
GRCh38
177
hg19
Lab
201
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
target.investigated_as!
narrow histone mark
month_released!
October, 2019
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
201 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
primary cell
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
+ See 17 more…
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