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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
4
RRBS
1
FAIRE-seq
Assay category
113
DNA binding
89
Transcription
10
DNA accessibility
4
DNA methylation
Target of assay
123
histone modification
122
histone
61
broad histone mark
narrow histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
3
control
Date released
574
February, 2021
267
November, 2017
264
May, 2021
233
May, 2020
216
August, 2017
176
June, 2019
164
July, 2018
98
October, 2019
91
July, 2019
71
November, 2018
63
May, 2019
62
December, 2017
57
September, 2018
55
November, 2019
49
April, 2018
49
August, 2021
45
February, 2023
42
April, 2019
39
May, 2022
36
October, 2018
30
December, 2018
29
March, 2020
23
February, 2018
23
January, 2019
12
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
210
bigWig
203
fastq
200
bam
92
bed narrowPeak
89
tsv
30
bigBed narrowPeak
27
bed bed3+
26
bed broadPeak
23
tagAlign
10
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
212
Homo sapiens
Biosample type
154
tissue
37
in vitro differentiated cells
25
primary cell
Organ
129
pancreas
50
connective tissue
15
liver
13
adipose tissue
10
musculature of body
9
epithelium
Project
216
AMP
Genome assembly (visualization)
216
hg19
197
GRCh38
Lab
216
AMP-T2D consortium
Audit category:
28
missing controlled_by
Audit category:
9
inconsistent control read length
2
inconsistent assembly
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
216 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
17
89
1
1
liver
13
1
white adipose tissue
12
skeletal muscle tissue
8
2
pancreas
8
+ See 2 more…
in vitro differentiated cells
adipocyte
36
1
primary cell
skeletal muscle myoblast
9
2
1
pancreatic alpha cell
3
1
pancreatic beta cell
3
1
pancreatic endocrine cell
4
pancreatic acinar cell
1
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