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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
79
total RNA-seq
76
ATAC-seq
54
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
185
Transcription
82
DNA accessibility
54
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
27
histone
27
histone modification
25
transcription factor
16
control
narrow histone mark
13
broad histone mark
7
RNA binding protein
6
chromatin remodeller
Date released
715
February, 2021
368
November, 2017
335
May, 2021
323
August, 2017
314
May, 2020
308
August, 2021
207
June, 2019
205
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
108
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
128
tsv
113
bed narrowPeak
67
bam
64
xls
59
bigWig
57
txt
27
fastq
18
bigBed narrowPeak
15
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
334
Homo sapiens
Biosample type
234
tissue
64
cell line
35
in vitro differentiated cells
2
primary cell
Organ
130
kidney
92
heart
36
liver
17
blood
17
bodily fluid
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
5
spleen
4
epithelium
4
pancreas
2
artery
1
adipose tissue
Project
335
AMP
Genome assembly (visualization)
119
GRCh38
72
hg19
Lab
169
AMP-T2D consortium
128
Katalin Susztak, Upenn
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
335 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 12 more…
cell line
HepG2
14
16
2
1
1
GM12878
17
H1-hESC
8
EndoC_BH1
2
HEK293T
2
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
7
10
14
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
2
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