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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
353
ChIP-seq
120
total RNA-seq
48
single cell RNA-seq
Assay category
353
DNA binding
168
Transcription
Target of assay
244
transcription factor
88
histone
88
histone modification
71
control
66
recombinant protein
50
broad histone mark
narrow histone mark
37
RNA binding protein
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
353
November, 2017
335
May, 2021
320
August, 2017
314
May, 2020
308
August, 2021
207
June, 2019
205
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
108
July, 2019
86
May, 2019
81
November, 2018
75
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
33
December, 2018
31
February, 2018
25
February, 2020
25
May, 2024
21
January, 2019
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
512
bam
453
bigWig
349
fastq
269
bed narrowPeak
269
bigBed narrowPeak
164
tsv
53
bed broadPeak
52
tagAlign
51
bigBed broadPeak
3
tar
Organism
521
Homo sapiens
Biosample type
293
cell line
174
tissue
54
primary cell
Organ
293
liver
157
pancreas
60
brain
37
epithelium
4
vasculature
2
blood vessel
2
connective tissue
Project
521
AMP
Genome assembly (visualization)
416
hg19
403
GRCh38
Lab
521
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
target.investigated_as!
narrow histone mark
chromatin remodeller
BIOSAMPLE
ASSAY
521 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
cell line
HepG2
293
tissue
islet of Langerhans
120
layer of hippocampus
15
caudate nucleus
10
substantia nigra
10
cingulate gyrus
9
+ See 2 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic cell
3
+ See 13 more…
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