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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
46
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
67
Transcription
63
DNA binding
27
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
32
control
30
histone
30
histone modification
19
broad histone mark
15
transcription factor
11
RNA binding protein
narrow histone mark
Date released
715
February, 2021
368
November, 2017
335
May, 2021
323
August, 2017
314
May, 2020
308
August, 2021
207
June, 2019
205
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
108
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
147
bam
121
bigWig
67
tsv
55
fastq
41
bed narrowPeak
36
bigBed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
173
Homo sapiens
Biosample type
140
tissue
33
primary cell
Organ
48
pancreas
41
connective tissue
35
adipose tissue
25
heart
18
brain
15
epithelium
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
173
AMP
Genome assembly (visualization)
127
hg19
115
GRCh38
Lab
173
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
173 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
body of pancreas
28
2
2
subcutaneous adipose tissue
12
4
1
omental fat pad
11
4
1
endocrine pancreas
10
heart left ventricle
2
1
4
2
+ See 27 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic acinar cell
2
+ See 21 more…
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