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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
39
total RNA-seq
18
small RNA-seq
12
WGBS
9
RRBS
6
ATAC-seq
6
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
63
DNA binding
60
Transcription
21
DNA methylation
8
DNA accessibility
6
3D chromatin structure
Target of assay
32
control
30
histone
30
histone modification
19
broad histone mark
15
transcription factor
11
RNA binding protein
narrow histone mark
Date released
683
February, 2021
364
November, 2017
314
May, 2020
311
May, 2021
304
August, 2021
302
August, 2017
189
June, 2019
153
February, 2023
147
October, 2019
135
July, 2018
120
May, 2022
95
July, 2019
88
November, 2018
82
May, 2019
66
December, 2017
63
October, 2018
57
April, 2019
56
March, 2020
47
September, 2023
45
November, 2019
40
September, 2020
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
10
November, 2020
8
January, 2018
8
September, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
140
bam
112
bigWig
60
tsv
53
fastq
41
bed narrowPeak
36
bigBed narrowPeak
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3+
2
hdf5
Organism
158
Homo sapiens
Biosample type
140
tissue
18
primary cell
Organ
48
pancreas
41
connective tissue
35
adipose tissue
25
heart
18
brain
epithelium
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
158
AMP
Genome assembly (visualization)
112
hg19
108
GRCh38
Lab
158
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
narrow histone mark
organ_slims!
epithelium
BIOSAMPLE
ASSAY
158 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
WGBS
RRBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
body of pancreas
28
2
2
subcutaneous adipose tissue
12
4
1
omental fat pad
11
4
1
endocrine pancreas
10
heart left ventricle
2
4
1
2
+ See 27 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 10 more…
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