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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
90
ChIP-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
197
DNA accessibility
90
DNA binding
7
DNA methylation
1
Transcription
Target of assay
68
transcription factor
25
RNA binding protein
19
histone
19
histone modification
16
recombinant protein
14
control
narrow histone mark
8
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
368
November, 2017
335
May, 2021
323
August, 2017
314
May, 2020
308
August, 2021
207
June, 2019
205
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
108
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
294
bam
279
bigWig
272
bed narrowPeak
272
bigBed narrowPeak
196
bed bed3+
196
bed broadPeak
196
bigBed broadPeak
88
fastq
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
295
Homo sapiens
Biosample type
189
tissue
61
cell line
45
primary cell
Organ
80
kidney
55
liver
39
musculature of body
33
heart
32
brain
32
limb
18
epithelium
18
ureter
15
blood
15
bodily fluid
15
connective tissue
11
pancreas
9
spleen
7
vasculature
6
eye
5
blood vessel
2
adipose tissue
2
artery
Project
295
AMP
Genome assembly (visualization)
278
GRCh38
247
hg19
Lab
295
AMP-T2D consortium
Audit category:
18
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
295 results
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Clear Filters
DNase-seq
ChIP-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
cell line
HepG2
45
1
GM12878
15
primary cell
cardiac fibroblast
3
3
mesenchymal stem cell
5
skeletal muscle satellite cell
5
cardiac muscle cell
1
2
epithelial cell of proximal tubule
1
2
+ See 18 more…
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