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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
368
ChIP-seq
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
Assay category
368
DNA binding
99
DNA accessibility
60
Transcription
41
DNA methylation
Target of assay
244
transcription factor
88
histone
88
histone modification
71
control
66
recombinant protein
50
broad histone mark
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
368
November, 2017
335
May, 2021
323
August, 2017
314
May, 2020
308
August, 2021
207
June, 2019
205
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
108
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
387
bam
338
fastq
324
bigWig
322
bed narrowPeak
284
bigBed narrowPeak
134
zippedFastqFolder
57
bed broadPeak
55
bigBed broadPeak
52
tagAlign
7
txt
3
tar
1
bed bed3+
Organism
568
Homo sapiens
Biosample type
308
cell line
140
primary cell
120
tissue
Organ
348
liver
104
pancreas
84
epithelium
60
brain
4
vasculature
2
blood vessel
2
musculature of body
Project
434
AMP
134
HPAP
Genome assembly (visualization)
306
hg19
252
GRCh38
Lab
370
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
9
missing controlled_by
Audit category:
16
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
568 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
cell line
HepG2
308
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
astrocyte of the cerebellum
2
+ See 2 more…
tissue
liver
20
20
islet of Langerhans
18
6
layer of hippocampus
15
caudate nucleus
10
substantia nigra
10
+ See 4 more…
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