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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
63
ChIP-seq
41
WGBS
34
single cell RNA-seq
28
total RNA-seq
22
snATAC-seq
Assay category
99
DNA accessibility
63
DNA binding
62
Transcription
41
DNA methylation
Target of assay
30
histone
30
histone modification
29
control
19
broad histone mark
15
transcription factor
11
RNA binding protein
narrow histone mark
Date released
715
February, 2021
368
November, 2017
335
May, 2021
323
August, 2017
314
May, 2020
308
August, 2021
207
June, 2019
205
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
108
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
89
bam
79
fastq
72
bed narrowPeak
56
bigWig
34
bigBed narrowPeak
7
txt
2
tsv
1
bed bed3+
Organism
265
Homo sapiens
Biosample type
136
primary cell
129
tissue
Organ
146
pancreas
82
epithelium
40
liver
23
adipose tissue
23
connective tissue
2
musculature of body
Project
134
HPAP
131
AMP
Genome assembly (visualization)
75
hg19
36
GRCh38
Lab
134
Klaus Kaestner, Upenn
67
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
265 results
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Clear Filters
ATAC-seq
ChIP-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
2
tissue
liver
20
20
body of pancreas
28
islet of Langerhans
18
6
subcutaneous adipose tissue
12
omental fat pad
11
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