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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
66
ATAC-seq
59
total RNA-seq
17
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
72
DNA accessibility
17
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
4
histone
4
histone modification
2
broad histone mark
narrow histone mark
1
RNA binding protein
Date released
268
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
100
May, 2021
93
August, 2017
59
September, 2020
58
May, 2020
47
March, 2020
47
September, 2023
41
October, 2019
26
July, 2019
25
February, 2020
25
May, 2024
19
April, 2020
16
January, 2021
15
May, 2023
10
November, 2020
8
January, 2018
7
August, 2020
7
October, 2017
5
December, 2019
5
March, 2023
5
November, 2017
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
123
tsv
95
bed narrowPeak
64
xls
57
txt
bam
36
bigWig
15
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
267
Homo sapiens
Biosample type
229
tissue
34
cell line
5
in vitro differentiated cells
Organ
130
kidney
92
heart
29
liver
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
268
AMP
Genome assembly (visualization)
64
GRCh38
18
hg19
Lab
128
Katalin Susztak, Upenn
102
AMP-T2D consortium
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
target.investigated_as!
narrow histone mark
organ_slims!
adrenal gland
files.file_type!
bam
BIOSAMPLE
ASSAY
268 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
16
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
neural progenitor cell
1
See all biosamples
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