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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
44
ChIP-seq
17
pCHi-C
11
ATAC-seq
10
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
105
Transcription
44
DNA binding
21
DNA accessibility
Target of assay
88
histone
88
histone modification
44
broad histone mark
narrow histone mark
Date released
112
May, 2021
45
May, 2020
23
February, 2023
8
January, 2021
4
March, 2020
Available data
142
bam
142
bigWig
98
tsv
44
bed narrowPeak
44
tagAlign
Organism
192
Homo sapiens
Biosample type
156
primary cell
29
tissue
7
cell line
Organ
30
pancreas
blood
8
bodily fluid
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3737
AMP
324
HPAP
192
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
142
GRCh38
142
hg19
Lab
188
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
target.investigated_as!
narrow histone mark
organ_slims!
blood
BIOSAMPLE
ASSAY
192 results
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total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
44
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 30 more…
tissue
islet of Langerhans
7
11
6
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
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