Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
total RNA-seq
56
ChIP-seq
42
ATAC-seq
4
Hi-C
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
Assay category
123
Transcription
56
DNA binding
42
DNA accessibility
4
3D chromatin structure
Target of assay
47
histone
47
histone modification
25
broad histone mark
narrow histone mark
16
transcription factor
15
control
5
RNA binding protein
Date released
121
May, 2021
35
August, 2021
26
February, 2021
16
February, 2023
10
August, 2017
8
March, 2020
8
October, 2019
5
November, 2019
2
December, 2019
Available data
250
bam
219
bigWig
131
tsv
fastq
92
bed narrowPeak
28
tagAlign
21
bed bed3+
12
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
231
Homo sapiens
Biosample type
1989
tissue
582
primary cell
231
in vitro differentiated cells
158
cell line
6
stem cell
Organ
38
connective tissue
4
epithelium
2
embryo
2
pancreas
1
heart
Project
231
AMP
Genome assembly (visualization)
171
hg19
139
GRCh38
Lab
187
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
111
inconsistent ontology term
2
audit script error
target.investigated_as!
narrow histone mark
organ_slims!
blood vessel
files.file_type!
fastq
BIOSAMPLE
ASSAY
231 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
27
6
1
neural progenitor cell
7
14
10
adipocyte
5
10
8
1
cardiac precursors (cardiac muscle cell)
19
1
1
+ See 21 more…
See all biosamples
Download