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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
158
ChIP-seq
56
snATAC-seq
47
WGBS
26
DNase-seq
17
pCHi-C
9
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
433
Transcription
283
DNA accessibility
158
DNA binding
57
DNA methylation
7
3D chromatin structure
Target of assay
234
histone
234
histone modification
122
broad histone mark
narrow histone mark
29
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
58
September, 2018
48
February, 2021
48
July, 2018
43
April, 2018
39
June, 2019
37
August, 2017
25
October, 2019
24
July, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
August, 2021
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
492
bam
484
bigWig
363
fastq
267
tsv
183
bed narrowPeak
153
zippedFastqFolder
75
bigBed narrowPeak
53
tagAlign
33
bed broadPeak
33
bigBed broadPeak
27
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
1
tar
Organism
955
Homo sapiens
Biosample type
2277
tissue
955
primary cell
643
cell line
339
in vitro differentiated cells
9
stem cell
Organ
371
epithelium
315
pancreas
35
connective tissue
31
kidney
29
vasculature
24
blood vessel
brain
16
vein
12
liver
11
heart
10
musculature of body
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
466
AMP
324
HPAP
164
T1D
1
ITG
Genome assembly (visualization)
498
hg19
423
GRCh38
Lab
441
AMP-T2D consortium
324
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
1
ITG
Audit category:
45
inconsistent ontology term
31
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
target.investigated_as!
narrow histone mark
organ_slims!
brain
BIOSAMPLE
ASSAY
955 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
9
31
1
Langerhans cell
85
48
monocyte
54
15
44
1
1
pancreatic beta cell
21
23
12
9
16
1
exocrine cell
39
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