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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
Assay category
34
DNA binding
Target of assay
31
histone
31
histone modification
19
transcription factor
narrow histone mark
15
broad histone mark
11
chromatin remodeller
6
RNA binding protein
1
recombinant protein
Date released
16
November, 2017
9
December, 2017
5
November, 2018
3
August, 2017
1
February, 2018
Available data
34
bam
34
bigWig
34
fastq
33
bed narrowPeak
23
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
tagAlign
5
bed bed3+
Organism
34
Homo sapiens
Biosample type
21
cell line
9
in vitro differentiated cells
3
tissue
1
stem cell
Organ
21
liver
connective tissue
3
pancreas
2
embryo
Project
34
AMP
Genome assembly (visualization)
34
hg19
31
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
34
inconsistent control read length
8
inconsistent control run_type
3
inconsistent assembly
target.investigated_as!
narrow histone mark
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
cell line
HepG2
21
in vitro differentiated cells
definitive endodermal cell
3
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
tissue
pancreas
3
stem cell
hESC
1
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