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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
26
ChIP-seq
7
total RNA-seq
6
Hi-C
6
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
26
DNA binding
10
Transcription
7
DNA methylation
6
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
narrow histone mark
6
control
Date released
39
June, 2019
19
August, 2017
12
July, 2019
5
March, 2020
5
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
58
bigWig
52
bam
49
bed narrowPeak
41
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
10
tagAlign
10
tsv
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
85
Homo sapiens
Biosample type
74
tissue
11
primary cell
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
64
hg19
49
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
target.investigated_as!
narrow histone mark
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
85 results
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DNase-seq
ChIP-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
15
1
4
1
1
1
1
muscle of leg
13
5
1
muscle of arm
17
gastrocnemius medialis
1
4
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
5
1
1
skeletal muscle cell
1
1
1
pericardium fibroblast
1
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