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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
DNase-seq
18
ChIP-seq
2
WGBS
1
ATAC-seq
1
pCHi-C
Assay category
20
DNA accessibility
18
DNA binding
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
narrow histone mark
Date released
18
June, 2019
9
November, 2018
7
December, 2018
5
January, 2019
1
March, 2020
1
October, 2017
Available data
40
bam
32
bigWig
30
bed narrowPeak
29
bigBed narrowPeak
22
fastq
19
bed bed3+
19
bed broadPeak
19
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
tsv
Organism
41
Homo sapiens
Biosample type
41
tissue
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
41
AMP
Genome assembly (visualization)
32
GRCh38
30
hg19
Lab
41
AMP-T2D consortium
target.investigated_as!
narrow histone mark
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
41 results
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DNase-seq
ChIP-seq
WGBS
ATAC-seq
pCHi-C
tissue
spleen
1
18
2
1
1
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
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