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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
492
ChIP-seq
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
492
DNA binding
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
4
Transcription
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
308
November, 2017
56
December, 2017
53
November, 2018
41
August, 2017
24
May, 2020
22
August, 2021
20
May, 2022
6
July, 2019
4
October, 2019
3
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
Available data
472
bam
441
fastq
411
bigWig
390
bed narrowPeak
344
bigBed narrowPeak
57
bed broadPeak
57
bigBed broadPeak
46
tagAlign
11
bed bed3+
5
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
542
Homo sapiens
Biosample type
378
cell line
147
tissue
10
in vitro differentiated cells
7
primary cell
Organ
542
liver
470
pancreas
344
epithelium
279
kidney
256
heart
177
connective tissue
152
brain
149
vasculature
144
blood vessel
100
limb
97
bone element
81
adipose tissue
79
artery
77
musculature of body
68
blood
68
bodily fluid
39
eye
30
nerve
23
spleen
20
lung
18
ureter
16
vein
15
embryo
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
542
AMP
Genome assembly (visualization)
414
hg19
331
GRCh38
Lab
502
AMP-T2D consortium
20
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
narrow histone mark
organ_slims!
ovary
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
542 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
369
1
1
2
2
2
1
tissue
liver
103
20
2
3
1
1
1
1
1
right lobe of liver
8
1
2
1
2
in vitro differentiated cells
hepatocyte
10
primary cell
hepatocyte
2
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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