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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
5
DNase-seq
3
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
15
DNA binding
7
DNA accessibility
3
Transcription
1
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
broad histone mark
narrow histone mark
3
control
Date released
80
May, 2022
52
February, 2023
50
September, 2018
33
April, 2018
33
July, 2018
32
February, 2021
26
October, 2019
24
May, 2021
21
August, 2017
19
September, 2020
18
June, 2019
13
July, 2019
12
December, 2017
12
November, 2019
7
August, 2020
6
December, 2019
6
November, 2020
5
March, 2020
5
September, 2017
4
August, 2021
4
May, 2019
4
November, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
23
bam
17
bigWig
13
bed narrowPeak
9
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
3
tsv
2
bed bed3+
1
hic
1
tar
Organism
26
Homo sapiens
Biosample type
24
primary cell
2
cell line
Organ
56
limb
37
blood vessel
37
vasculature
34
nerve
26
epithelium
25
kidney
22
artery
19
eye
15
pancreas
15
vein
12
brain
6
heart
5
liver
3
connective tissue
1
adipose tissue
1
pituitary gland
1
skin of body
Project
26
AMP
Genome assembly (visualization)
19
hg19
15
GRCh38
Lab
26
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
target.investigated_as!
narrow histone mark
organ_slims!
ovary
BIOSAMPLE
ASSAY
26 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
11
2
1
1
epithelial cell of proximal tubule
4
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Liver fetal (hepatocyte)
1
cell line
glomerular visceral epithelial cell
1
1
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