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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
total RNA-seq
129
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
136
Transcription
129
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
97
histone
97
histone modification
49
broad histone mark
narrow histone mark
46
transcription factor
33
control
9
RNA binding protein
2
chromatin remodeller
Date released
117
May, 2021
52
August, 2017
35
August, 2021
31
February, 2018
26
February, 2021
18
December, 2017
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
234
bam
207
bigWig
129
tsv
96
fastq
82
bed narrowPeak
26
tagAlign
21
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
323
Homo sapiens
Biosample type
2437
tissue
602
primary cell
570
cell line
323
in vitro differentiated cells
9
stem cell
Organ
81
connective tissue
21
embryo
epithelium
10
liver
2
pancreas
1
adipose tissue
1
heart
Project
323
AMP
Genome assembly (visualization)
245
hg19
213
GRCh38
4
hg18
Lab
279
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
15
inconsistent control read length
target.investigated_as!
narrow histone mark
organ_slims!
ovary
epithelium
BIOSAMPLE
ASSAY
323 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
5
51
8
1
1
cardiomyocytes
59
3
embryonic stem cell
7
29
6
1
neural progenitor cell
7
14
10
cardiac precursors (cardiac muscle cell)
19
1
1
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