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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
99
ChIP-seq
69
single cell RNA-seq
56
ATAC-seq
10
WGBS
3
DNase-seq
2
FAIRE-seq
Assay category
253
Transcription
99
DNA binding
61
DNA accessibility
10
DNA methylation
Target of assay
100
histone
100
histone modification
52
broad histone mark
narrow histone mark
30
control
17
transcription factor
8
RNA binding protein
Date released
140
August, 2017
57
September, 2018
39
July, 2018
37
February, 2023
34
April, 2018
32
October, 2018
24
May, 2022
19
September, 2020
11
September, 2017
7
August, 2020
7
November, 2018
6
February, 2021
5
October, 2017
3
August, 2018
1
June, 2018
1
March, 2019
Available data
622
bam
554
bigWig
423
fastq
417
tsv
155
bed narrowPeak
80
zippedFastqFolder
72
bigBed narrowPeak
23
bed bed3+
17
bed broadPeak
12
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
418
Homo sapiens
Biosample type
227
primary cell
196
tissue
Organ
446
liver
423
pancreas
229
epithelium
88
connective tissue
59
blood
59
bodily fluid
43
adipose tissue
22
spleen
19
embryo
17
brain
4
vasculature
2
blood vessel
2
musculature of body
Project
354
AMP
69
HPAP
Genome assembly (visualization)
315
hg19
309
GRCh38
Lab
328
AMP-T2D consortium
69
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
Audit category:
28
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
narrow histone mark
organ_slims!
ovary
BIOSAMPLE
ASSAY
423 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
52
9
12
13
6
pancreatic beta cell
21
9
12
10
pancreatic ductal cell
4
6
9
4
pancreatic acinar cell
4
4
9
5
pancreatic delta cell
11
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tissue
islet of Langerhans
103
20
20
1
1
body of pancreas
28
4
2
2
pancreas
12
2
1
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