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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
319
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
319
DNA binding
162
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
286
transcription factor
81
recombinant protein
70
histone modification
69
histone
51
RNA binding protein
narrow histone mark
28
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
1
control
Date released
211
November, 2017
143
May, 2020
52
November, 2018
43
December, 2017
14
August, 2017
7
July, 2019
5
December, 2019
5
January, 2019
5
October, 2019
2
June, 2019
1
August, 2021
1
February, 2021
1
March, 2020
Available data
490
bam
487
bigWig
326
bed narrowPeak
325
fastq
312
bigBed narrowPeak
162
tsv
44
bed broadPeak
44
bigBed broadPeak
9
bed bed3+
6
tagAlign
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
490
Homo sapiens
Biosample type
262
cell line
210
tissue
9
in vitro differentiated cells
9
primary cell
Organ
568
pancreas
549
connective tissue
490
liver
423
adipose tissue
246
epithelium
227
heart
190
kidney
166
vasculature
163
blood vessel
122
artery
110
brain
83
limb
66
bone element
53
blood
53
bodily fluid
48
musculature of body
23
nerve
22
embryo
18
ureter
14
spleen
8
skeleton
7
vein
5
eye
1
pericardium
Project
490
AMP
Genome assembly (visualization)
573
hg19
490
GRCh38
Lab
490
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
4
missing controlled_by
Audit category:
18
inconsistent control read length
6
inconsistent control run_type
target.investigated_as!
narrow histone mark
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
490 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
255
5
1
1
tissue
liver
49
147
2
1
right lobe of liver
5
2
1
1
2
in vitro differentiated cells
hepatocyte
9
primary cell
hepatocyte
1
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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