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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
26
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
1
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
narrow histone mark
6
control
Date released
19
August, 2017
10
July, 2019
6
June, 2019
5
March, 2020
5
May, 2019
2
February, 2020
1
January, 2018
1
May, 2022
Available data
57
bigWig
51
bam
49
bed narrowPeak
41
bed broadPeak
41
bigBed narrowPeak
bed bed3+
33
bigBed broadPeak
10
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
49
Homo sapiens
Biosample type
40
tissue
9
primary cell
Organ
850
pancreas
720
liver
624
connective tissue
473
adipose tissue
456
epithelium
323
heart
261
kidney
197
vasculature
194
blood vessel
159
bone element
134
brain
131
artery
71
limb
68
blood
68
bodily fluid
54
eye
49
musculature of body
33
nerve
27
embryo
spleen
20
lung
16
skeleton
14
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
49
AMP
Genome assembly (visualization)
28
hg19
15
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
target.investigated_as!
narrow histone mark
organ_slims!
spleen
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
15
1
4
1
1
1
muscle of leg
5
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
5
1
1
skeletal muscle cell
1
1
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