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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
61
ChIP-seq
Assay category
195
DNA accessibility
61
DNA binding
Target of assay
47
transcription factor
26
histone
26
histone modification
14
broad histone mark
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
53
November, 2017
10
August, 2017
9
November, 2018
3
October, 2019
1
November, 2020
Available data
2828
bam
2574
bigWig
1532
tsv
1255
bed narrowPeak
1244
fastq
835
bigBed narrowPeak
278
bed broadPeak
256
bigBed broadPeak
247
bed bed3+
218
tagAlign
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
vcf
Organism
256
Homo sapiens
Biosample type
171
tissue
53
cell line
31
primary cell
1
in vitro differentiated cells
Organ
78
kidney
57
liver
36
limb
35
brain
33
musculature of body
30
heart
20
epithelium
18
ureter
vasculature
12
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
256
AMP
Genome assembly (visualization)
241
GRCh38
234
hg19
Lab
256
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
8
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
narrow histone mark
organ_slims!
vasculature
BIOSAMPLE
ASSAY
256 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
cell line
HepG2
52
Panc1
1
primary cell
skeletal muscle myoblast
1
8
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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