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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
81
total RNA-seq
40
ATAC-seq
5
pCHi-C
4
DNase-seq
2
ChIP-seq
1
RRBS
Assay category
81
Transcription
44
DNA accessibility
2
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
150
February, 2021
39
February, 2023
19
October, 2019
6
June, 2019
1
February, 2020
1
July, 2019
1
May, 2021
Available data
88
txt
72
bam
63
bigWig
63
tsv
40
bed narrowPeak
5
bigBed narrowPeak
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
217
Homo sapiens
Biosample type
212
tissue
5
primary cell
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
339
kidney
328
heart
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
216
AMP
1
T1D
Genome assembly (visualization)
103
hg19
71
GRCh38
Lab
216
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
217 results
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RNA microarray
total RNA-seq
ATAC-seq
pCHi-C
DNase-seq
ChIP-seq
RRBS
tissue
bone element
84
bone tissue
58
retina
3
15
3
islet of Langerhans
14
1
4
pigmented layer of retina
2
12
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primary cell
retinal pigment epithelial cell
1
2
1
megakaryocyte
1
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