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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
94
DNA binding
24
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
175
histone
175
histone modification
narrow histone mark
66
broad histone mark
31
control
Date released
55
November, 2017
18
July, 2019
18
May, 2019
12
February, 2020
12
October, 2017
12
October, 2019
2
March, 2020
1
February, 2023
Available data
138
bam
116
bigWig
97
bed narrowPeak
94
bigBed narrowPeak
64
tagAlign
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
26
tsv
17
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
130
Homo sapiens
Biosample type
120
tissue
10
primary cell
Organ
856
pancreas
674
liver
642
connective tissue
477
adipose tissue
455
epithelium
298
heart
261
kidney
195
vasculature
193
blood vessel
159
bone element
131
artery
130
brain
71
limb
68
blood
68
bodily fluid
54
eye
42
musculature of body
33
nerve
29
embryo
22
spleen
20
lung
16
skeleton
12
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
130
AMP
Genome assembly (visualization)
71
GRCh38
43
hg19
Lab
130
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
target.investigated_as!
narrow histone mark
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
1
1
1
layer of hippocampus
15
temporal lobe
10
1
1
caudate nucleus
10
1
substantia nigra
10
1
+ See 22 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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