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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
ChIP-seq
65
DNase-seq
23
total RNA-seq
9
Hi-C
7
RRBS
6
small RNA-seq
5
ATAC-seq
4
single cell RNA-seq
3
pCHi-C
1
FAIRE-seq
1
WGBS
1
snATAC-seq
Assay category
127
DNA binding
72
DNA accessibility
33
Transcription
9
3D chromatin structure
8
DNA methylation
Target of assay
220
histone
220
histone modification
narrow histone mark
90
broad histone mark
37
control
3
RNA binding protein
3
transcription factor
Date released
69
June, 2019
60
November, 2017
28
July, 2019
23
May, 2019
19
August, 2017
14
February, 2020
14
October, 2017
12
October, 2019
7
March, 2020
2
May, 2022
2
November, 2018
1
February, 2023
1
January, 2018
Available data
189
bam
173
bigWig
146
bed narrowPeak
135
bigBed narrowPeak
80
bed broadPeak
74
tagAlign
69
bed bed3+
68
bigBed broadPeak
35
tsv
19
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
txt
Organism
252
Homo sapiens
Biosample type
224
tissue
28
primary cell
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
339
kidney
328
heart
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
252
AMP
Genome assembly (visualization)
158
GRCh38
134
hg19
Lab
252
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
1
audit script error
Audit category:
3
missing controlled_by
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
252 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
FAIRE-seq
WGBS
snATAC-seq
tissue
brain
16
14
1
1
1
skeletal muscle tissue
15
1
4
1
1
1
1
muscle of leg
5
13
1
muscle of arm
17
layer of hippocampus
15
+ See 37 more…
primary cell
skeletal muscle satellite cell
5
1
1
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
skeletal muscle cell
1
1
1
+ See 4 more…
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