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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
3
WGBS
3
single cell RNA-seq
2
ATAC-seq
2
DNase-seq
1
pCHi-C
Assay category
77
DNA binding
4
DNA accessibility
3
DNA methylation
3
Transcription
Target of assay
39
transcription factor
26
histone
26
histone modification
25
control
narrow histone mark
12
broad histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
59
August, 2017
23
October, 2018
2
July, 2018
1
April, 2018
1
August, 2018
1
November, 2018
1
October, 2017
Available data
576
bam
552
bigWig
478
tsv
88
fastq
57
bed narrowPeak
27
bed bed3+
23
bigBed narrowPeak
15
tagAlign
9
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
88
Homo sapiens
Biosample type
43
in vitro differentiated cells
42
tissue
3
primary cell
Organ
446
liver
423
pancreas
229
epithelium
88
connective tissue
59
blood
59
bodily fluid
43
adipose tissue
22
spleen
19
embryo
17
brain
4
vasculature
2
blood vessel
2
musculature of body
Project
88
AMP
Genome assembly (visualization)
62
GRCh38
60
hg19
Lab
88
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
88 results
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Clear Filters
ChIP-seq
WGBS
single cell RNA-seq
ATAC-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
41
1
white fat cell
1
tissue
omental fat pad
11
1
1
subcutaneous adipose tissue
12
1
white adipose tissue
12
adipose tissue
1
3
primary cell
pancreatic stellate cell
3
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