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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
12
total RNA-seq
1
GRO-seq
Assay category
12
DNA binding
12
Transcription
Target of assay
10
histone
10
histone modification
narrow histone mark
5
control
4
broad histone mark
3
transcription factor
Date released
10
February, 2018
8
August, 2021
6
December, 2017
1
January, 2018
Available data
24
bam
20
bigWig
17
fastq
12
tsv
7
bed narrowPeak
2
bed bed3+
Organism
25
Homo sapiens
Biosample type
17
in vitro differentiated cells
8
cell line
Organ
798
pancreas
730
liver
636
connective tissue
478
adipose tissue
394
epithelium
324
heart
318
kidney
209
vasculature
205
blood vessel
168
brain
135
artery
106
limb
77
musculature of body
75
bone element
68
blood
68
bodily fluid
58
eye
35
nerve
25
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
25
AMP
Genome assembly (visualization)
20
GRCh38
20
hg19
1
hg18
Lab
25
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
2
inconsistent control read length
target.investigated_as!
narrow histone mark
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
25 results
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Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
12
4
1
cell line
H1-hESC
8
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