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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
14
total RNA-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
GRO-seq
1
pCHi-C
Assay category
32
DNA binding
14
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
18
histone
18
histone modification
15
control
narrow histone mark
9
transcription factor
8
broad histone mark
3
other context
3
other post-translational modification
Date released
10
February, 2018
9
November, 2018
8
August, 2021
8
December, 2017
7
December, 2018
5
January, 2019
2
May, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
50
bam
41
fastq
36
bigWig
19
bed narrowPeak
15
tsv
11
bigBed narrowPeak
3
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
Organism
52
Homo sapiens
Biosample type
23
tissue
21
in vitro differentiated cells
8
cell line
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
36
GRCh38
34
hg19
1
hg18
Lab
52
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
target.investigated_as!
narrow histone mark
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
52 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
ATAC-seq
DNase-seq
GRO-seq
pCHi-C
tissue
spleen
18
2
1
1
1
in vitro differentiated cells
pancreatic endoderm
12
4
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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