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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
total RNA-seq
14
ChIP-seq
12
ATAC-seq
1
GRO-seq
Assay category
18
Transcription
14
DNA binding
12
DNA accessibility
Target of assay
12
histone
12
histone modification
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
10
February, 2018
8
August, 2021
8
December, 2017
8
February, 2021
8
February, 2023
2
May, 2021
1
January, 2018
Available data
36
bam
22
bigWig
19
fastq
15
bed narrowPeak
14
tsv
4
bed bed3
4
txt
2
bed bed3+
Organism
45
Homo sapiens
Biosample type
21
in vitro differentiated cells
16
tissue
8
cell line
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
339
kidney
328
heart
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
45
AMP
Genome assembly (visualization)
34
hg19
30
GRCh38
1
hg18
Lab
45
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
45 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
4
12
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
+ See 7 more…
cell line
H1-hESC
8
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