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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
36
DNase-seq
7
total RNA-seq
4
Hi-C
2
ATAC-seq
1
WGBS
Assay category
51
DNA binding
38
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
narrow histone mark
Date released
56
October, 2019
32
June, 2019
February, 2021
5
July, 2019
5
May, 2019
3
February, 2020
Available data
94
bam
77
bigWig
72
bed narrowPeak
70
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
101
Homo sapiens
Biosample type
101
tissue
Organ
841
pancreas
728
liver
443
epithelium
331
kidney
262
heart
196
connective tissue
169
brain
144
vasculature
139
blood vessel
101
limb
93
adipose tissue
83
musculature of body
69
artery
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
vein
9
bone element
8
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
101
AMP
Genome assembly (visualization)
77
GRCh38
76
hg19
Lab
101
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
narrow histone mark
month_released!
February, 2021
BIOSAMPLE
ASSAY
101 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
tissue
tibial nerve
27
2
5
1
tibial artery
19
2
1
1
muscle of leg
5
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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