Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
DNase-seq
32
ChIP-seq
7
ATAC-seq
6
total RNA-seq
4
Hi-C
1
WGBS
Assay category
41
DNA accessibility
32
DNA binding
6
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
12
control
narrow histone mark
Date released
34
October, 2019
32
June, 2019
6
February, 2021
5
July, 2019
5
May, 2019
2
February, 2020
Available data
78
bam
61
bed narrowPeak
60
bigWig
54
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
6
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
84
Homo sapiens
Biosample type
84
tissue
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
339
kidney
328
heart
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
84
AMP
Genome assembly (visualization)
66
GRCh38
65
hg19
Lab
84
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
narrow histone mark
organ_slims!
vasculature
BIOSAMPLE
ASSAY
84 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
2
27
1
5
muscle of leg
13
5
1
muscle of arm
17
gastrocnemius medialis
1
4
distal epiphysis of femur
1
+ See 7 more…
See all biosamples
Download