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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
5
total RNA-seq
2
DNase-seq
1
ATAC-seq
1
pCHi-C
Assay category
27
DNA binding
14
Transcription
13
DNA accessibility
Target of assay
24
histone
24
histone modification
16
broad histone mark
11
control
narrow histone mark
Date released
34
October, 2019
19
April, 2020
1
February, 2020
1
March, 2020
Available data
34
bam
23
bigWig
19
bed narrowPeak
18
bigBed narrowPeak
6
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
54
Homo sapiens
Biosample type
55
tissue
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
339
kidney
328
heart
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
36
AMP
19
LungMap
Genome assembly (visualization)
23
GRCh38
23
hg19
Lab
36
AMP-T2D consortium
19
Xin Sun, UCSD
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
tissue
tibial nerve
27
5
2
1
lung
10
9
1
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