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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
28
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
58
Transcription
49
DNA accessibility
28
DNA binding
Target of assay
24
histone
24
histone modification
14
broad histone mark
narrow histone mark
9
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
22
October, 2019
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
Available data
96
bam
79
bigWig
68
bed narrowPeak
59
tsv
19
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
136
Homo sapiens
Biosample type
68
tissue
66
cell line
2
primary cell
Organ
731
liver
691
pancreas
650
connective tissue
479
adipose tissue
353
heart
321
epithelium
292
kidney
210
vasculature
205
blood vessel
169
brain
158
bone element
135
artery
107
limb
83
musculature of body
60
blood
60
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
136
AMP
Genome assembly (visualization)
122
GRCh38
87
hg19
Lab
136
AMP-T2D consortium
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
136 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
coronary artery
1
36
3
2
tibial artery
1
1
19
2
pulmonary artery
2
ovary
1
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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